Scatterplot of ADC and cellularity with regression line and 95% confidence interval.Īggregated mean ADC and cellularity values per patient are displayed (37 patients). For patient 2 (E-H), it was ADC = 1479mm 2/s and cellularity = 2208 cells/mm 2. For patient 1(A-D), analysis yielded ADC = 658mm 2/s and cellularity = 16840 cells/mm 2. Berry College i was inspired UChicago ducksinarow. This video was inspired by Anna McLean's 2011 Academic Excellence Conference presentation: htt. D,H: semi-automatic cell counting on 8-bit images by the ImageJ plugin ITCN. A quick tutorial on using ImageJ to count cells automatically. C,G: Scanned biopsy specimens of the respective location (HE stain, x20 magnification). The biopsy location on this slice is marked by a white crosshair.
B,F: Preoperative ADC-maps, which have been registered to intraoperative scans as described. as described above, were manually counted and NeuN+ cells were automatically counted using ITCN plugin of ImageJ.
#Itcn imagej install#
The trajectory is defined by the coordinates of the entry point E(104/128/114) and target point T(112/141/53) and biopsy specimens are taken along the trajectory, mainly close to the target point.Ĭomparison of two exemplary patients (patient 1: A-D, patient 2: E-H).Ī,E: Intraoperative cT1-scans. 1) First, you must install the Cell Counter plugin, which is available on the microscopy server under ImageJ plugins 1 analysis.
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